Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis | Nature Communications
Use of short-read RNA-Seq data to identify transcripts that can translate novel ORFs | bioRxiv
RNA-seq Analysis with Tuxedo Tools - Unipro UGENE User Manual - WIKI
Each tool X∈{Cufflinks, IsoLasso, CLASS, CIDANE, MITIE, StringTie } is... | Download Scientific Diagram
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads | Nature Biotechnology
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. - Abstract - Europe PMC
EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications | Epigenetics & Chromatin | Full Text
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads | Nature Biotechnology
How does Cufflinks compare to StringTie?
StringTie
Transcript Assembly Visualization · griffithlab/rnaseq_tutorial Wiki · GitHub
Reference-based RNAseq data analysis (long)
How not to perform a differential expression analysis (or science) | Bits of DNA
GffCompare
A comprehensive RNA-Seq pipeline includes meta-analysis, interactivity and automatic reporting
BIRCH Tutorial - Generating Gene Expression data from RNAseq reads
A comparison of transcriptome analysis methods with reference genome | BMC Genomics | Full Text
RNA Sequencing Pipeline — GenPipes 4.3.2 documentation
11: A side-by-side comparison of the Tuxedo (left) and... | Download Scientific Diagram
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads | Nature Biotechnology
A comparison of transcriptome analysis methods with reference genome | BMC Genomics | Full Text
Transcript Assembly Visualization | Griffith Lab
